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Cbr-gly-4 Protein CBR-GLY-4 [ Caenorhabditis briggsae ]

Gene ID: 8590335, updated on 10-Oct-2024

Summary

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Gene symbol
Cbr-gly-4
Gene description
Protein CBR-GLY-4
Locus tag
CBG_24518
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-gly-4 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
8

NW_025543506.1Genomic Context describing neighboring genes Neighboring gene Protein CBR-DHS-24 Neighboring gene Protein CBG24517 Neighboring gene Protein CBR-FARS-2 Neighboring gene Protein CBG24522

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025543506.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination. Ross JA, et al. PLoS Genet, 2011 Jul. PMID 21779179, Free PMC Article
  2. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-GLY-4
XP_045091357.1
  • C. briggsae CBR-GLY-4 protein; contains similarity to Pfam domains PF00652 (Ricin-type beta-trefoil lectin domain), PF00535 (Glycosyl transferase family 2) contains similarity to Interpro domains IPR000772 (Ricin B lectin), IPR001173 (Glycosyl transferase, family 2);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_025543506.1 Reference assembly

    Range
    17332..23955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045241113.1 → XP_045091357.1  Protein CBR-GLY-4 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8WKW5
    Conserved Domains (2) summary
    cd02510
    Location:153 → 448
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:467 → 577
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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