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CBG23627 Protein CBG23627 [ Caenorhabditis briggsae ]

Gene ID: 8589837, updated on 10-Oct-2024

Summary

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Gene symbol
CBG23627
Gene description
Protein CBG23627
Locus tag
CBG_23627
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG23627 in Genome Data Viewer
Location:
chromosome: V
Exon count:
8
Sequence:
Chromosome: V; NC_013488.2 (2467443..2477459)

Chromosome V - NC_013488.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-FIPP-1 Neighboring gene Protein CBG26642 Neighboring gene Protein CBR-SRBC-59 Neighboring gene Protein CBR-SRAB-16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013488.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG23627
XP_002647838.2
  • contains similarity to Pfam domains PF07719 (Tetratricopeptide repeat), PF08409 (Domain of unknown function (DUF1736)), PF00515 (Tetratricopeptide repeat) (3)contains similarity to Interpro domains IPR013618 (Domain of unknown function DUF1736), IPR001760 (Opsin), IPR001440 (Tetratricopeptide TPR-1), IPR013105 (Tetratricopeptide TPR2), IPR019734 (Tetratricopeptide repeat);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013488.2 Reference assembly

    Range
    2467443..2477459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002647792.2 → XP_002647838.2  Protein CBG23627 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    H8WH72
    Conserved Domains (3) summary
    TIGR02917
    Location:423 → 760
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:436 → 463
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:243 → 313
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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