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Cbr-gly-10 Protein CBR-GLY-10 [ Caenorhabditis briggsae ]

Gene ID: 8589196, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-gly-10
Gene description
Protein CBR-GLY-10
Locus tag
CBG_22373
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-gly-10 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
8
Sequence:
Chromosome: IV; NC_013487.2 (2978338..2983604)

Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBG22371 Neighboring gene Protein CBR-RPL-18 Neighboring gene Protein CBR-LACT-9 Neighboring gene Protein CBG22375 Neighboring gene Protein CBR-SAS-6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013487.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-GLY-10
XP_045097552.1
  • C. briggsae CBR-GLY-10 protein; contains similarity to Pfam domains PF00652 (Ricin-type beta-trefoil lectin domain), PF00535 (Glycosyl transferase family 2) contains similarity to Interpro domains IPR000772 (Ricin B lectin), IPR001173 (Glycosyl transferase, family 2);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013487.2 Reference assembly

    Range
    2978338..2983604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045244943.1 → XP_045097552.1  Protein CBR-GLY-10 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8Y236
    UniProtKB/TrEMBL
    A0AAE9EUM8
    Conserved Domains (2) summary
    cd02510
    Location:167 → 465
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:481 → 607
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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