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Cbr-sqv-2 Protein CBR-SQV-2 [ Caenorhabditis briggsae ]

Gene ID: 8588914, updated on 30-Nov-2023

Summary

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Gene symbol
Cbr-sqv-2
Gene description
Protein CBR-SQV-2
Locus tag
CBG_19617
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-sqv-2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
10
Sequence:
Chromosome: II; NC_013486.2 (12559836..12564314)

Chromosome II - NC_013486.2Genomic Context describing neighboring genes Neighboring gene Protein CBG19620 Neighboring gene Protein CBR-UBC-15 Neighboring gene Protein CBG19616 Neighboring gene Protein CBR-HPO-20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013486.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosaminoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-SQV-2
XP_045096822.1
  • C. briggsae CBR-SQV-2 protein; contains similarity to Pfam domains PF00179 (Ubiquitin-conjugating enzyme), PF01762 (Galactosyltransferase) contains similarity to Interpro domains IPR002659 (Glycosyl transferase, family 31), IPR000608 (Ubiquitin-conjugating enzyme, E2);
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013486.2 Reference assembly

    Range
    12559836..12564314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045242805.1 → XP_045096822.1  Protein CBR-SQV-2 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8XW11
    Conserved Domains (2) summary
    cd00195
    Location:11 → 123
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    cl21608
    Location:301 → 488
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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