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CBG16703 Protein CBG16703 [ Caenorhabditis briggsae ]

Gene ID: 8587048, updated on 10-Oct-2024

Summary

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Gene symbol
CBG16703
Gene description
Protein CBG16703
Locus tag
CBG_16703
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG16703 in Genome Data Viewer
Location:
chromosome: X
Exon count:
10
Sequence:
Chromosome: X; NC_013491.2 (13019423..13024370, complement)

Chromosome X - NC_013491.2Genomic Context describing neighboring genes Neighboring gene Protein CBG16701 Neighboring gene Protein CBG16702 Neighboring gene Protein CBG16704 Neighboring gene Protein CBR-LGC-11 Neighboring gene Protein CBG16706

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013491.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glucose:glycoprotein glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG16703
XP_045096043.1
  • contains similarity to Pfam domains PF01501 (Glycosyl transferase family 8), PF06427 (UDP-glucose:Glycoprotein Glucosyltransferase) contains similarity to Interpro domains IPR009448 (UDP-glucose:Glycoprotein Glucosyltransferase), IPR002495 (Glycosyl transferase, family 8);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013491.2 Reference assembly

    Range
    13019423..13024370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045239969.1 → XP_045096043.1  Protein CBG16703 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8XPN2
    Conserved Domains (6) summary
    pfam06427
    Location:1076 → 1182
    UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase
    pfam18400
    Location:75 → 207
    Thioredoxin_12; Thioredoxin-like domain
    pfam18401
    Location:277 → 397
    Thioredoxin_13; Thioredoxin-like domain
    pfam18402
    Location:418 → 664
    Thioredoxin_14; Thioredoxin-like domain
    pfam18403
    Location:698 → 908
    Thioredoxin_15; Thioredoxin-like domain
    pfam18404
    Location:1206 → 1473
    Glyco_transf_24; Glucosyltransferase 24
Nucleotide Protein
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