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Cbr-hap-1 Protein CBR-HAP-1 [ Caenorhabditis briggsae ]

Gene ID: 8584778, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-hap-1
Gene description
Protein CBR-HAP-1
Locus tag
CBG_21178
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-hap-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_013490.2 (13158344..13160994)

Chromosome III - NC_013490.2Genomic Context describing neighboring genes Neighboring gene Protein CBG21180 Neighboring gene Protein CBG21179 Neighboring gene Protein CBR-GRO-1 Neighboring gene Protein CBG21176

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013490.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleoside triphosphate diphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleoside triphosphate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-HAP-1
XP_002642784.1
  • C. briggsae CBR-HAP-1 protein; contains similarity to Pfam domain PF01725 Ham1 family contains similarity to Interpro domain IPR002637 (Ham1-like protein);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013490.2 Reference assembly

    Range
    13158344..13160994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002642738.1 → XP_002642784.1  Protein CBR-HAP-1 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002642784.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8XZP2
    UniProtKB/TrEMBL
    A0AAE9ESP1, A0AAE9ISR0
    Conserved Domains (1) summary
    cd00515
    Location:6 → 180
    HAM1; NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8XZP2.1

Gene LinkOut

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Molecular Biology Databases
Research Materials