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Cbr-pri-1 Protein CBR-PRI-1 [ Caenorhabditis briggsae ]

Gene ID: 8583691, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-pri-1
Gene description
Protein CBR-PRI-1
Locus tag
CBG_10030
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-pri-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
7
Sequence:
Chromosome: III; NC_013490.2 (9411822..9413338, complement)

Chromosome III - NC_013490.2Genomic Context describing neighboring genes Neighboring gene Protein CBG25905 Neighboring gene Protein CBG10029 Neighboring gene Protein CBG10031 Neighboring gene Protein CBR-CPAR-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013490.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA primase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication, synthesis of primer IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of alpha DNA polymerase:primase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-PRI-1
XP_002641697.1
  • C. briggsae CBR-PRI-1 protein; contains similarity to Pfam domain PF01896 Eukaryotic and archaeal DNA primase small subunit contains similarity to Interpro domains IPR014052 (DNA primase, small subunit, eukaryotic/archaeal), IPR002755 (DNA primase, small subunit);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013490.2 Reference assembly

    Range
    9411822..9413338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002641651.1 → XP_002641697.1  Protein CBR-PRI-1 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002641697.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9DE05, A8XA78
    Conserved Domains (1) summary
    cd04860
    Location:21 → 352
    AE_Prim_S; AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its ...
Nucleotide Protein
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