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Cbr-sqv-3 Protein CBR-SQV-3 [ Caenorhabditis briggsae ]

Gene ID: 8583636, updated on 10-Oct-2024

Summary

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Gene symbol
Cbr-sqv-3
Gene description
Protein CBR-SQV-3
Locus tag
CBG_09970
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-sqv-3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_013490.2 (9217386..9218768)

Chromosome III - NC_013490.2Genomic Context describing neighboring genes Neighboring gene Protein CBG09966 Neighboring gene Protein CBG09969 Neighboring gene Protein CBR-USP-46 Neighboring gene Protein CBG09973

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013490.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables xylosylprotein 4-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-SQV-3
XP_045094164.1
  • C. briggsae CBR-SQV-3 protein; contains similarity to Interpro domain IPR003859 (Galactosyltransferase, metazoa);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013490.2 Reference assembly

    Range
    9217386..9218768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045244228.1 → XP_045094164.1  Protein CBR-SQV-3 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9DDC1, A8XA24
    Conserved Domains (1) summary
    cd00899
    Location:47 → 274
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

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