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CBG13253 Protein CBG13253 [ Caenorhabditis briggsae ]

Gene ID: 8583384, updated on 6-Jun-2024

Summary

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Gene symbol
CBG13253
Gene description
Protein CBG13253
Locus tag
CBG_13253
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG13253 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_013490.2 (6109214..6110216)

Chromosome III - NC_013490.2Genomic Context describing neighboring genes Neighboring gene Protein CBG13251 Neighboring gene Protein CBR-GLY-8 Neighboring gene Protein CBG13254 Neighboring gene Protein CBG13256

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013490.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG13253
XP_002641392.1
  • contains similarity to Pfam domains PF01501 (Glycosyl transferase family 8), PF11051 (Mannosyltransferase putative) contains similarity to Interpro domains IPR022751 (Alpha-mannosyltransferase), IPR002495 (Glycosyl transferase, family 8);
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013490.2 Reference assembly

    Range
    6109214..6110216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002641346.1 → XP_002641392.1  Protein CBG13253 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002641392.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9DB22, A8XHE6
    Conserved Domains (2) summary
    cd02537
    Location:3 → 243
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:6 → 223
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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