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Cbr-let-502 Protein CBR-LET-502 [ Caenorhabditis briggsae ]

Gene ID: 8581368, updated on 10-Oct-2024

Summary

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Gene symbol
Cbr-let-502
Gene description
Protein CBR-LET-502
Locus tag
CBG_03960
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-let-502 in Genome Data Viewer
Location:
chromosome: I
Exon count:
10
Sequence:
Chromosome: I; NC_013489.2 (4756212..4760411, complement)

Chromosome I - NC_013489.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-UGT-25 Neighboring gene Protein CBG03961 Neighboring gene Protein CBG03958 Neighboring gene Protein CBR-CPG-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013489.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Rho-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cortical actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-threonine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-LET-502
XP_045092537.1
  • C. briggsae CBR-LET-502 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase), PF00069 (Protein kinase domain), PF00433 (Protein kinase C terminal domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR017892 (Protein kinase, C-terminal), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000961 (AGC-kinase, C-terminal), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol binding), IPR020635 (Tyrosine-protein kinase, catalytic domain);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013489.2 Reference assembly

    Range
    4756212..4760411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045244434.1 → XP_045092537.1  Protein CBR-LET-502 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8WVU9
    Conserved Domains (4) summary
    COG0419
    Location:436 → 930
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd20813
    Location:1083 → 1141
    C1_ROCK; protein kinase C conserved region 1 (C1 domain) found in the Rho-associated coiled-coil containing protein kinase (ROCK) family
    cl17171
    Location:961 → 1081
    PH-like; Pleckstrin homology-like domain
    cl21453
    Location:41 → 393
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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