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Cbr-fer-1 Protein CBR-FER-1 [ Caenorhabditis briggsae ]

Gene ID: 8581119, updated on 10-Oct-2024

Summary

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Gene symbol
Cbr-fer-1
Gene description
Protein CBR-FER-1
Locus tag
CBG_14944
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-fer-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
20
Sequence:
Chromosome: I; NC_013489.2 (3633126..3640372)

Chromosome I - NC_013489.2Genomic Context describing neighboring genes Neighboring gene Protein CBG14942 Neighboring gene Protein CBG14943 Neighboring gene Protein CBR-CRN-1 Neighboring gene Protein CBG14946

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013489.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-FER-1
XP_045095571.1
  • C. briggsae CBR-FER-1 protein; contains similarity to Pfam domains PF00168 (C2 domain) (3), PF08165 (FerA (NUC095) domain), PF08150 (FerB (NUC096) domain) contains similarity to Interpro domains IPR012561 (Ferlin B-domain), IPR006614 (Ferlin/Peroxisome membrane), IPR000792 (Transcription regulator LuxR, C-terminal), IPR001484 (Pyrokinin, conserved site), IPR012560 (Ferlin A-domain), IPR000008 (C2 calcium-dependent membrane targeting);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013489.2 Reference assembly

    Range
    3633126..3640372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045242986.1 → XP_045095571.1  Protein CBR-FER-1 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8XL24
    Conserved Domains (8) summary
    cd04017
    Location:1026 → 1159
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04037
    Location:1438 → 1561
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08374
    Location:1778 → 1907
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:771 → 826
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:680 → 754
    FerB; FerB (NUC096) domain
    pfam08165
    Location:584 → 643
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1969 → 2120
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:296 → 400
    C2; C2 domain
Nucleotide Protein
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