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Cbr-bre-4 Protein CBR-BRE-4 [ Caenorhabditis briggsae ]

Gene ID: 8580934, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-bre-4
Gene description
Protein CBR-BRE-4
Locus tag
CBG_22165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-bre-4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_013489.2 (2631816..2635247)

Chromosome I - NC_013489.2Genomic Context describing neighboring genes Neighboring gene Protein CBG25185 Neighboring gene Protein CBG22164 Neighboring gene Protein CBG22166 Neighboring gene Protein CBG22167 Neighboring gene Protein CBG22168

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013489.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-1,4-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-BRE-4
XP_002638938.1
  • C. briggsae CBR-BRE-4 protein; contains similarity to Pfam domain PF02709 N-terminal domain of galactosyltransferase contains similarity to Interpro domain IPR003859 (Galactosyltransferase, metazoa);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013489.2 Reference assembly

    Range
    2631816..2635247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002638892.1 → XP_002638938.1  Protein CBR-BRE-4 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002638938.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8Y1P7
    UniProtKB/TrEMBL
    A0AAE9DQ66, A0AAE9E054
    Conserved Domains (1) summary
    cd00899
    Location:148 → 366
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8Y1P7.1

Gene LinkOut

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Molecular Biology Databases
Research Materials