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Cbr-gly-20 Protein CBR-GLY-20 [ Caenorhabditis briggsae ]

Gene ID: 8578481, updated on 10-Oct-2024

Summary

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Gene symbol
Cbr-gly-20
Gene description
Protein CBR-GLY-20
Locus tag
CBG_23158
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-gly-20 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_013488.2 (9749594..9752006, complement)

Chromosome V - NC_013488.2Genomic Context describing neighboring genes Neighboring gene Protein CBG23161 Neighboring gene Protein CBG23160 Neighboring gene Protein CBR-CLEC-223 Neighboring gene Protein CBG23155 Neighboring gene Protein CBR-CLN-3.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013488.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-GLY-20
XP_002636486.2
  • C. briggsae CBR-GLY-20 protein; contains similarity to Pfam domain PF05060 N-acetylglucosaminyltransferase II (MGAT2) contains similarity to Interpro domain IPR007754 (N-acetylglucosaminyltransferase II);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013488.2 Reference assembly

    Range
    9749594..9752006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002636440.2 → XP_002636486.2  Protein CBR-GLY-20 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9A1S9, A8Y4K3
    Conserved Domains (1) summary
    pfam05060
    Location:99 → 445
    MGAT2; N-acetylglucosaminyltransferase II (MGAT2)
Nucleotide Protein
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