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Cbr-hst-1 Protein CBR-HST-1 [ Caenorhabditis briggsae ]

Gene ID: 8576663, updated on 10-Oct-2024

Summary

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Gene symbol
Cbr-hst-1
Gene description
Protein CBR-HST-1
Locus tag
CBG_19653
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-hst-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
11
Sequence:
Chromosome: IV; NC_013487.2 (14443348..14452158, complement)

Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBG19651 Neighboring gene Protein CBG19652 Neighboring gene Protein CBR-DIC-1 Neighboring gene Protein CBG19656

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013487.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-HST-1
XP_045096830.1
  • C. briggsae CBR-HST-1 protein; contains similarity to Pfam domains PF12062 (heparan sulfate-N-deacetylase), PF00685 (Sulfotransferase domain) contains similarity to Interpro domains IPR000863 (Sulfotransferase domain), IPR021930 (Heparan sulphate-N-deacetylase);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013487.2 Reference assembly

    Range
    14443348..14452158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045236194.1 → XP_045096830.1  Protein CBR-HST-1 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8XW41, Q60V90
    Conserved Domains (2) summary
    pfam12062
    Location:18 → 492
    HSNSD; heparan sulfate-N-deacetylase
    cl21551
    Location:583 → 829
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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