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Cbr-sqv-8 Protein CBR-SQV-8 [ Caenorhabditis briggsae ]

Gene ID: 8573133, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-sqv-8
Gene description
Protein CBR-SQV-8
Locus tag
CBG_01067
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-sqv-8 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_013486.2 (3651..5361)

Chromosome II - NC_013486.2Genomic Context describing neighboring genes Neighboring gene Protein CBG01066 Neighboring gene Protein CBG25443

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013486.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-SQV-8
XP_002629821.1
  • C. briggsae CBR-SQV-8 protein; contains similarity to Pfam domain PF03360 Glycosyltransferase family 43 contains similarity to Interpro domain IPR005027 (Glycosyl transferase, family 43);
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013486.2 Reference assembly

    Range
    3651..5361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002629775.1 → XP_002629821.1  Protein CBR-SQV-8 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002629821.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9E543, A0AAE9IS16, G2J6B5, Q5CAS0
    Conserved Domains (1) summary
    cd00218
    Location:97 → 327
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
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