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PUL4 Pul4p [ Saccharomyces cerevisiae S288C ]

Gene ID: 855800, updated on 18-Sep-2024

Summary

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Official Symbol
PUL4
Official Full Name
Pul4p
Primary source
SGD:S000005346
Locus tag
YNR063W
See related
AllianceGenome:SGD:S000005346; FungiDB:YNR063W; VEuPathDB:YNR063W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription from RNA polymerase II promoter by galactose. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See PUL4 in Genome Data Viewer
Location:
chromosome: XIV
Exon count:
1
Sequence:
Chromosome: XIV; NC_001146.8 (746943..748766)

Chromosome XIV - NC_001146.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Pul3p Neighboring gene epoxide hydrolase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001146.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts. Krause DJ, et al. Proc Natl Acad Sci U S A, 2018 Oct 23. PMID 30297402, Free PMC Article
  2. Iterative carotenogenic screens identify combinations of yeast gene deletions that enhance sclareol production. Trikka FA, et al. Microb Cell Fact, 2015 Apr 24. PMID 25903744, Free PMC Article
  3. Chromatin remodeling complexes are involvesd in the regulation of ethanol production during static fermentation in budding yeast. Fang T, et al. Genomics, 2020 Mar. PMID 31618673
  4. Phenotypic analysis of genes encoding yeast zinc cluster proteins. Akache B, et al. Nucleic Acids Res, 2001 May 15. PMID 11353088, Free PMC Article
  5. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Badis G, et al. Mol Cell, 2008 Dec 26. PMID 19111667, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding HDA PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in biological_process ND
No biological Data available
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Pul4p
NP_014461.3
  • Putative zinc-cluster transcription factor; involved in utilization of iron-transporting siderophore pulcherrimin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001146.8 Reference assembly

    Range
    746943..748766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183240.3 → NP_014461.3  TPA: Pul4p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_014461.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6W1N8, P53749
    UniProtKB/TrEMBL
    A6ZSD7, B3LPI0, B5VR88, C7GIY3, C8ZFU2
    Conserved Domains (2) summary
    cd12148
    Location:184 → 575
    fungal_TF_MHR; fungal transcription factor regulatory middle homology region
    smart00066
    Location:10 → 47
    GAL4; GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P53749.1

Gene LinkOut

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