U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATR1 borate transporter [ Saccharomyces cerevisiae S288C ]

Gene ID: 854924, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ATR1
Official Full Name
borate transporter
Primary source
SGD:S000004584
Locus tag
YML116W
See related
AllianceGenome:SGD:S000004584; FungiDB:YML116W; VEuPathDB:YML116W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
SNQ1
Summary
Enables borate efflux transmembrane transporter activity. Involved in borate transport. Located in plasma membrane and vacuole. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATR1 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (38196..39824)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene 3'-5' poly(A) RNA exonuclease Neighboring gene Nab6p Neighboring gene Van1p Neighboring gene Taf8p

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Allelism of SNQ1 and ATR1, genes of the yeast Saccharomyces cerevisiae required for controlling sensitivity to 4-nitroquinoline-N-oxide and aminotriazole. Gömpel-Klein P, et al. Curr Genet, 1990 Jul. PMID 2123132
  2. Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures. Dunn B, et al. BMC Genomics, 2005 Apr 16. PMID 15833139, Free PMC Article
  3. Boron demanding tissues of Brassica napus express specific sets of functional Nodulin26-like Intrinsic Proteins and BOR1 transporters. Diehn TA, et al. Plant J, 2019 Oct. PMID 31148338, Free PMC Article
  4. Molecular characterization of the two genes SNQ and SFA that confer hyperresistance to 4-nitroquinoline-N-oxide and formaldehyde in Saccharomyces cerevisiae. Gömpel-Klein P, et al. Curr Genet, 1989 Aug. PMID 2557161
  5. Saccharomyces cerevisiae basic region-leucine zipper protein regulatory networks converge at the ATR1 structural gene. Coleman ST, et al. J Biol Chem, 1997 Sep 12. PMID 9287330

See all (30) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data suggest that Atr1 functions as a boron efflux pump and is required for boron tolerance
    Title: Identification of a novel system for boron transport: Atr1 is a main boron exporter in yeast.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables borate efflux transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in borate transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in borate transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell periphery HDA PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IMP
Inferred from Mutant Phenotype
more info
 PubMed 
located_in vacuole IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
borate transporter
NP_013591.1
  • Multidrug efflux pump of the major facilitator superfamily; required for resistance to aminotriazole and 4-nitroquinoline-N-oxide; ATR1 has a paralog, YMR279C, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    38196..39824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182478.1 → NP_013591.1  TPA: borate transporter [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013591.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6W0G8, P13090
    UniProtKB/TrEMBL
    A6ZLU8, B3LLE3, C7GV98, C8ZE87, G2WJU0, N1P065
    Conserved Domains (1) summary
    cd17476
    Location:73 → 517
    MFS_Amf1_MDR_like; Saccharomyces cerevisiae low affinity ammonium transporter Amf1p/YOR378W, aminotriazole resistance protein Atr1p, and similar transporters of the Major Facilitator Superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P13090.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools