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Y' element ATP-dependent helicase [ Saccharomyces cerevisiae S288C ]

Gene ID: 853231, updated on 14-Nov-2024

Summary

Official Full Name
Y' element ATP-dependent helicase
Primary source
SGD:S000003760
Locus tag
YJL225C
See related
AllianceGenome:SGD:S000003760; FungiDB:YJL225C; VEuPathDB:YJL225C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable helicase activity. Predicted to be involved in telomere maintenance via recombination. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome and primary immunodeficiency disease. Orthologous to human DHX58 (DExH-box helicase 58); RIGI (RNA sensor RIG-I); and IFIH1 (interferon induced with helicase C domain 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:
chromosome: X
Exon count:
2
Sequence:
Chromosome: X; NC_001142.9 (466..6130, complement)

Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene seripauperin PAU1 Neighboring gene signal sequence-binding protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP-dependent H2AZ histone chaperone activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP-dependent H3-H4 histone complex chaperone activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
 
enables chromatin extrusion motor activity IEA
Inferred from Electronic Annotation
more info
 
enables cohesin loader activity IEA
Inferred from Electronic Annotation
more info
 
enables double-stranded DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables forked DNA-dependent helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables single-stranded 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 
involved_in biological_process ND
No biological Data available
more info
 
involved_in chromatin looping IEA
Inferred from Electronic Annotation
more info
 
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 
involved_in telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
Y' element ATP-dependent helicase
NP_012311.1
  • Putative Y' element ATP-dependent helicase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001142.9 Reference assembly

    Range
    466..6130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181657.1NP_012311.1  TPA: Y' element ATP-dependent helicase [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_012311.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VVX3, P40887, P40889, Q05371, Q9UQW2
    Conserved Domains (3) summary
    COG0513
    Location:6071133
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    pfam11603
    Location:1388
    Sir1; Regulatory protein Sir1
    cl23921
    Location:15561609
    YccJ; YccJ-like protein