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uncharacterized protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 850922, updated on 28-Oct-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
SGD:S000004215
Locus tag
YLR225C
See related
AllianceGenome:SGD:S000004215; FungiDB:YLR225C; VEuPathDB:YLR225C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to be involved in response to oxidative stress. Located in cytoplasm. [provided by Alliance of Genome Resources, Oct 2024]
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Genomic context

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Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (587695..588918, complement)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene Ifh1p Neighboring gene Ucc1p Neighboring gene Bur2p Neighboring gene Ady4p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001144.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of interactors for yeast protein arginine methyltransferase Hmt1 reveals novel substrate and insights into additional biological roles. Jackson CA, et al. Proteomics, 2012 Nov. PMID 22997150
  2. Functional profiling of the Saccharomyces cerevisiae genome. Giaever G, et al. Nature, 2002 Jul 25. PMID 12140549
  3. RNA-binding and prion domains: the Yin and Yang of phase separation. Gotor NL, et al. Nucleic Acids Res, 2020 Sep 25. PMID 32857852, Free PMC Article
  4. The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Johnston M, et al. Nature, 1997 May 29. PMID 9169871, Free PMC Article
  5. Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy. Kaake RM, et al. J Proteome Res, 2010 Apr 5. PMID 20170199, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_013326.1
  • hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; not an essential gene; YLR225C has a paralog, YDR222W, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    587695..588918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182112.1 → NP_013326.1  TPA: uncharacterized protein YLR225C [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013326.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VYM5, Q05948
    UniProtKB/TrEMBL
    A7A1B2, B3RHB3, B5VNE4, C7GIV3, G2WJ54, N1NZF5
    Conserved Domains (2) summary
    pfam08622
    Location:65 → 261
    Svf1; Svf1-like N-terminal lipocalin domain
    pfam17187
    Location:265 → 406
    Svf1_C; Svf1-like C-terminal lipocalin-like domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q05948.1

Gene LinkOut

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