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SNHG7 small nucleolar RNA host gene 7 [ Homo sapiens (human) ]

Gene ID: 84973, updated on 10-Oct-2023

Summary

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Official Symbol
SNHG7provided by HGNC
Official Full Name
small nucleolar RNA host gene 7provided by HGNC
Primary source
HGNC:HGNC:28254
See related
Ensembl:ENSG00000233016 AllianceGenome:HGNC:28254
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00061
Expression
Ubiquitous expression in ovary (RPKM 15.1), thyroid (RPKM 12.1) and 25 other tissues See more
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Genomic context

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Location:
9q34.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (136724594..136728184, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (148957775..148961362, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139619046..139622636, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene EGF like domain multiple 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139569227-139569726 Neighboring gene microRNA 126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139573281-139573980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139573981-139574680 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139576202-139577064 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139580514-139581375 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20536 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139591540-139592050 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139592051-139592559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29320 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139607687-139608611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29321 Neighboring gene cuticle collagen 2-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29322 Neighboring gene divergent protein kinase domain 1B Neighboring gene Sharpr-MPRA regulatory region 5701 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20538 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:139623217-139623386 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29323 Neighboring gene small nucleolar RNA, H/ACA box 17B Neighboring gene small nucleolar RNA, H/ACA box 17A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139627044-139627888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139629713-139630212 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20539 Neighboring gene uncharacterized LOC100128593 Neighboring gene lipocalin 10 Neighboring gene microRNA 6722 Neighboring gene lipocalin 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Abnormal Expression of SNHG7 Is a Biomarker for the Diagnosis and Prognosis of Neonatal Sepsis. Li L, et al. Tohoku J Exp Med, 2022 Nov 11. PMID 35965096
  2. Exosome-mediated transfer of SNHG7 enhances docetaxel resistance in lung adenocarcinoma. Zhang K, et al. Cancer Lett, 2022 Feb 1. PMID 34715254
  3. Clinicopathological and prognostic value of long noncoding RNA SNHG7 in cancers: a meta-analysis and bioinformatics. Wang J, et al. Aging (Albany NY), 2021 Oct 29. PMID 34714775, Free PMC Article
  4. The Prognostic Value of Long Non-Coding RNA SNHG7 in Human Cancer: A Meta-Analysis. Yu K, et al. Curr Pharm Biotechnol, 2022. PMID 34375186
  5. Downregulation of long noncoding RNA SNHG7 protects against inflammation and apoptosis in Parkinson's disease model by targeting the miR-425-5p/TRAF5/NF-κB axis. Zhang H, et al. J Biochem Mol Toxicol, 2021 Oct. PMID 34369042

See all (51) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Abnormal Expression of SNHG7 Is a Biomarker for the Diagnosis and Prognosis of Neonatal Sepsis.
    Title: Abnormal Expression of SNHG7 Is a Biomarker for the Diagnosis and Prognosis of Neonatal Sepsis.
  2. Metformin Affects Paclitaxel Sensitivity of Ovarian Cancer Cells Through Autophagy Mediated by Long Noncoding RNASNHG7/miR-3127-5p Axis.
    Title: Metformin Affects Paclitaxel Sensitivity of Ovarian Cancer Cells Through Autophagy Mediated by Long Noncoding RNASNHG7/miR-3127-5p Axis.
  3. The Prognostic Value of Long Non-Coding RNA SNHG7 in Human Cancer: A Meta-Analysis.
    Title: The Prognostic Value of Long Non-Coding RNA SNHG7 in Human Cancer: A Meta-Analysis.
  4. METTL3-stabilized lncRNA SNHG7 accelerates glycolysis in prostate cancer via SRSF1/c-Myc axis.
    Title: METTL3-stabilized lncRNA SNHG7 accelerates glycolysis in prostate cancer via SRSF1/c-Myc axis.
  5. LncRNA SNHG7 Promotes the HCC Progression Through miR-122-5p/FOXK2 Axis.
    Title: LncRNA SNHG7 Promotes the HCC Progression Through miR-122-5p/FOXK2 Axis.
  6. Long non-coding RNA (LncRNA) SNHG7/ Eukaryotic translation initiation factor 4 gamma 2 (EIF4G2) involves in the malignant events of ovarian cancer cells with paclitaxel resistant.
    Title: Long non-coding RNA (LncRNA) SNHG7/ Eukaryotic translation initiation factor 4 gamma 2 (EIF4G2) involves in the malignant events of ovarian cancer cells with paclitaxel resistant.
  7. Downregulation of long noncoding RNA SNHG7 protects against inflammation and apoptosis in Parkinson's disease model by targeting the miR-425-5p/TRAF5/NF-kappaB axis.
    Title: Downregulation of long noncoding RNA SNHG7 protects against inflammation and apoptosis in Parkinson's disease model by targeting the miR-425-5p/TRAF5/NF-κB axis.
  8. Exosome-mediated transfer of SNHG7 enhances docetaxel resistance in lung adenocarcinoma.
    Title: Exosome-mediated transfer of SNHG7 enhances docetaxel resistance in lung adenocarcinoma.
  9. MicroRNA-21 inhibits ovarian granulosa cell proliferation by targeting SNHG7 in premature ovarian failure with polycystic ovary syndrome.
    Title: MicroRNA-21 inhibits ovarian granulosa cell proliferation by targeting SNHG7 in premature ovarian failure with polycystic ovary syndrome.
  10. Clinicopathological and prognostic value of long noncoding RNA SNHG7 in cancers: a meta-analysis and bioinformatics.
    Title: Clinicopathological and prognostic value of long noncoding RNA SNHG7 in cancers: a meta-analysis and bioinformatics.
Submit: New GeneRIF Correction See all GeneRIFs (48)

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • small nucleolar RNA host gene (non-protein coding) 7
  • small nucleolar RNA host gene 7 (non-protein coding)

Clone Names

  • MGC16037

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003672.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has an unspliced 3' sequence and is the longest transcript.
    Source sequence(s)
    AL355987
    Related
    ENST00000447221.1

  2. NR_024542.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) consists of four exons and the 3' sequence is spliced, as compared to variant 1.
    Source sequence(s)
    BC042369, BC059956, BC061888
    Related
    ENST00000653276.1

  3. NR_024543.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) consists of five exons and the 3' sequence is spliced, as compared to variant 1.
    Source sequence(s)
    BC042369, BC059956, BC061888
    Related
    ENST00000416970.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    136724594..136728184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    148957775..148961362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032887.1: Suppressed sequence

    Description
    NM_032887.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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