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ATP1A1-AS1 ATP1A1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 84852, updated on 10-Oct-2023

Summary

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Official Symbol
ATP1A1-AS1provided by HGNC
Official Full Name
ATP1A1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:28262
See related
Ensembl:ENSG00000203865 MIM:618305; AllianceGenome:HGNC:28262
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ATP1A1OS; C1orf203
Expression
Ubiquitous expression in kidney (RPKM 93.4), duodenum (RPKM 80.0) and 25 other tissues See more
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Genomic context

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See ATP1A1-AS1 in Genome Data Viewer
Location:
1p13.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (116392865..116418622, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (116400935..116426692, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (116935487..116961244, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378919 Neighboring gene uncharacterized LOC105378920 Neighboring gene small nucleolar RNA U3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1229 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1561 Neighboring gene ATPase Na+/K+ transporting subunit alpha 1 Neighboring gene NANOG hESC enhancer GRCh37_chr1:116958386-116958887 Neighboring gene Sharpr-MPRA regulatory region 13778 Neighboring gene RNA, U6 small nuclear 817, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:116968695-116969196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:116969197-116969696 Neighboring gene long intergenic non-protein coding RNA 1762 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:116985590-116985791 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:117013937-117014172 Neighboring gene HNF1 motif-containing MPRA enhancer 99 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117020893-117021452 Neighboring gene uncharacterized LOC112268235 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:117025970-117026470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1562

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Characterization of a Long Non-Coding RNA, the Antisense RNA of Na/K-ATPase α1 in Human Kidney Cells. Fan X, et al. Int J Mol Sci, 2018 Jul 21. PMID 30037072, Free PMC Article
  2. LncRNA ATP1A1-AS1 inhibits cell proliferation and promotes cell apoptosis in thyroid carcinoma by regulating the miR-620/IRF2BP2 axis. Jia J, et al. Am J Med Sci, 2023 Jan. PMID 36002076
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA ATP1A1-AS1 inhibits cell proliferation and promotes cell apoptosis in thyroid carcinoma by regulating the miR-620/IRF2BP2 axis.
    Title: LncRNA ATP1A1-AS1 inhibits cell proliferation and promotes cell apoptosis in thyroid carcinoma by regulating the miR-620/IRF2BP2 axis.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ATP1A1 opposite strand

Clone Names

  • MGC16179

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024124.2 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (5) includes a terminal exon that overlaps, on the opposite strand, the terminus of the ATP1A1 gene (GeneID: 476).
    Source sequence(s)
    BC069003, BC098428

  2. NR_024125.2 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (4) includes an alternate exon compared to variant 5.
    Source sequence(s)
    AL136376, BC098428, BX389823
    Related
    ENST00000369492.5

  3. NR_024126.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (3) includes an alternate exon compared to variant 5.
    Source sequence(s)
    BC007373

  4. NR_027645.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (2) has an alternate terminal exon compared to variant 1.
    Source sequence(s)
    BC028281

  5. NR_027646.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (1) had an alternate terminal exon and overlaps, on the opposite strand, the the ATP1A1 gene (GeneID: 476).
    Source sequence(s)
    DC351073

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    116392865..116418622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    116400935..116426692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032766.1: Suppressed sequence

    Description
    NM_032766.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5TC04.1 GenPept UniProtKB/Swiss-Prot:Q5TC04

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.