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PPR596 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844367, updated on 22-Aug-2024

Summary

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Official Symbol
PPR596
Primary source
Araport:AT1G80270
Locus tag
AT1G80270
See related
TAIR:AT1G80270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5I6.2; F5I6_2; PENTATRICOPEPTIDE REPEAT 596
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (30180907..30183561)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene nucleotide transporter 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
  2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PPR596 Is Required for nad2 Intron Splicing and Complex I Biogenesis in Arabidopsis.
    Title: PPR596 Is Required for nad2 Intron Splicing and Complex I Biogenesis in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084384.3
NM_001334976.1
NM_001334977.1
NM_106676.2
NM_202461.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
PENTATRICOPEPTIDE REPEAT 596
NP_001077853.1
  • PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
NP_178143.1
  • PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
NP_974190.1
  • PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30180907..30183561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202461.3 → NP_974190.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974190.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YX6, Q9C977
    UniProtKB/TrEMBL
    A0A178W3Z6, A0A5S9WW29
    Conserved Domains (3) summary
    TIGR00756
    Location:437 → 468
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:407 → 429
    PPR; PPR repeat [structural motif]
    pfam13812
    Location:250 → 309
    PPR_3; Pentatricopeptide repeat domain

  2. NM_001084384.3 → NP_001077853.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077853.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YX6, Q9C977
    UniProtKB/TrEMBL
    A0A178W3Z6, A0A5S9WW29
    Conserved Domains (3) summary
    TIGR00756
    Location:437 → 468
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:407 → 429
    PPR; PPR repeat [structural motif]
    pfam13812
    Location:250 → 309
    PPR_3; Pentatricopeptide repeat domain

  3. NM_001334976.1 → NP_001321807.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YX6, Q9C977
    UniProtKB/TrEMBL
    A0A178W3Z6, A0A5S9WW29
    Conserved Domains (3) summary
    TIGR00756
    Location:437 → 468
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:407 → 429
    PPR; PPR repeat [structural motif]
    pfam13812
    Location:250 → 309
    PPR_3; Pentatricopeptide repeat domain

  4. NM_106676.2 → NP_178143.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178143.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YX6, Q9C977
    UniProtKB/TrEMBL
    A0A178W3Z6, A0A5S9WW29
    Conserved Domains (3) summary
    TIGR00756
    Location:437 → 468
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:407 → 429
    PPR; PPR repeat [structural motif]
    pfam13812
    Location:250 → 309
    PPR_3; Pentatricopeptide repeat domain

  5. NM_001334977.1 → NP_001321806.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YX6, Q9C977
    UniProtKB/TrEMBL
    A0A178W3Z6, A0A5S9WW29
    Conserved Domains (3) summary
    TIGR00756
    Location:437 → 468
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:407 → 429
    PPR; PPR repeat [structural motif]
    pfam13812
    Location:250 → 309
    PPR_3; Pentatricopeptide repeat domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C977.1

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