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Plant regulator RWP-RK family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843967, updated on 18-Sep-2024

Summary

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Official Full Name
Plant regulator RWP-RK family protein
Primary source
TAIR:AT1G76350
Locus tag
AT1G76350
See related
Araport:AT1G76350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15M4.15; F15M4_15; NIN-like protein 5; NLP5
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (28639453..28643086)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Ser Neighboring gene golgi nucleotide sugar transporter 3 Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. NIN-Like Proteins: Interesting Players in Rhizobia-Induced Nitrate Signaling Response During Interaction with Non-Legume Host Arabidopsis thaliana. Hernández-Reyes C, et al. Mol Plant Microbe Interact, 2022 Mar. PMID 34813707
  2. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001334724.1
NM_001334725.1
NM_001334726.1
NM_106284.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in response to nitrate IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant regulator RWP-RK family protein
NP_177761.1
  • Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G20640.2); Has 692 Blast hits to 593 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 620; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28639453..28643086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106284.5 → NP_177761.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177761.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFW8, Q9SGQ2
    UniProtKB/TrEMBL
    A0A178W0G0, A0A5S9WUU7
    Conserved Domains (2) summary
    cd06407
    Location:711 → 787
    PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
    pfam02042
    Location:549 → 597
    RWP-RK; RWP-RK domain

  2. NM_001334724.1 → NP_001321850.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFW8, Q9SGQ2
    UniProtKB/TrEMBL
    A0A178W0G0, A0A5S9WUU7
    Conserved Domains (2) summary
    cd06407
    Location:711 → 787
    PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
    pfam02042
    Location:549 → 597
    RWP-RK; RWP-RK domain

  3. NM_001334725.1 → NP_001321849.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFW8, Q9SGQ2
    UniProtKB/TrEMBL
    A0A178W0G0, A0A5S9WUU7
    Conserved Domains (2) summary
    cd06407
    Location:711 → 787
    PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
    pfam02042
    Location:549 → 597
    RWP-RK; RWP-RK domain

  4. NM_001334726.1 → NP_001321851.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFW8, Q9SGQ2
    UniProtKB/TrEMBL
    A0A178W0G0, A0A5S9WUU7
    Conserved Domains (2) summary
    cd06407
    Location:711 → 787
    PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
    pfam02042
    Location:549 → 597
    RWP-RK; RWP-RK domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SFW8.1

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