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GER1 germin-like protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843593, updated on 18-Sep-2024

Summary

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Official Symbol
GER1
Official Full Name
germin-like protein 1
Primary source
TAIR:AT1G72610
Locus tag
AT1G72610
See related
Araport:AT1G72610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA GERMIN-LIKE PROTEIN 1; ATGER1; F28P22.20; F28P22_20; germin-like protein 1; GERMIN-LIKE PROTEIN 1; GLP1
Summary
germin-like protein (GLP1)
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Genomic context

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See GER1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (27339114..27340044, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ELF4-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana germin-like proteins: common and specific features point to a variety of functions. Membré N, et al. Planta, 2000 Aug. PMID 10987552
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_105920.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
NOT enables oxalate oxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
germin-like protein 1
NP_177405.1
  • germin-like protein 1 (GER1); INVOLVED IN: biological_process unknown; LOCATED IN: extracellular matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin 3 (TAIR:AT5G20630.1); Has 1559 Blast hits to 1557 proteins in 130 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 43; Plants - 1420; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27339114..27340044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105920.2 → NP_177405.1  germin-like protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177405.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04751, P94040, Q96265
    UniProtKB/TrEMBL
    A0A178WCD6, A0A384L3S4, Q549N9, Q8VZ99
    Conserved Domains (1) summary
    cd02241
    Location:19 → 204
    cupin_OxOx; Oxalate oxidase (germin), cupin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P94040.1

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