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SUC5 Major facilitator superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843520, updated on 18-Sep-2024

Summary

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Official Symbol
SUC5
Official Full Name
Major facilitator superfamily protein
Primary source
TAIR:AT1G71890
Locus tag
AT1G71890
See related
Araport:AT1G71890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSUC5; F17M19.4; F17M19_4; SUCROSE-PROTON SYMPORTER 5
Summary
Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.
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Genomic context

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See SUC5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (27058381..27060786)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene sucrose-proton symporter 1 Neighboring gene magnesium transporter, putative (DUF803) Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The AtSUC5 sucrose transporter specifically expressed in the endosperm is involved in early seed development in Arabidopsis. Baud S, et al. Plant J, 2005 Sep. PMID 16146522
  2. SUCROSE TRANSPORTER 5 supplies Arabidopsis embryos with biotin and affects triacylglycerol accumulation. Pommerrenig B, et al. Plant J, 2013 Feb. PMID 23031218, Free PMC Article
  3. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. efficacy of biotin supplementation was significantly lower in double than in single mutants, showing that transport of biotin into the embryo is lower in the absence of SUC5
    Title: SUCROSE TRANSPORTER 5 supplies Arabidopsis embryos with biotin and affects triacylglycerol accumulation.
  2. The gene was specifically and highly induced during seed development between 4 and 9 days after flowering (DAF).
    Title: The AtSUC5 sucrose transporter specifically expressed in the endosperm is involved in early seed development in Arabidopsis.
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General gene information

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NM_105847.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables biotin transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables sucrose transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables sucrose:proton symporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within seed development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in seed development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in sucrose transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Major facilitator superfamily protein
NP_177334.1
  • SUC5; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: seed development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 1 (TAIR:AT1G71880.1); Has 2157 Blast hits to 2049 proteins in 534 species: Archae - 36; Bacteria - 796; Metazoa - 398; Fungi - 190; Plants - 419; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27058381..27060786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105847.3 → NP_177334.1  Major facilitator superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177334.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C8X2, Q9FNY9
    UniProtKB/TrEMBL
    A0A7G2E557
    Conserved Domains (2) summary
    TIGR01301
    Location:29 → 501
    GPH_sucrose; GPH family sucrose/H+ symporter
    cl21472
    Location:31 → 213
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C8X2.1

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