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GH9B1 glycosyl hydrolase 9B1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843408, updated on 18-Sep-2024

Summary

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Official Symbol
GH9B1
Official Full Name
glycosyl hydrolase 9B1
Primary source
TAIR:AT1G70710
Locus tag
AT1G70710
See related
Araport:AT1G70710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATGH9B1; CEL1; CELLULASE 1; F5A18.11; F5A18_11; glycosyl hydrolase 9B1
Summary
endo-1,4-beta-glucanase. Involved in cell elongation.
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Genomic context

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See GH9B1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (26659129..26663337, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Receptor-like protein kinase-related family protein Neighboring gene TIFY domain/Divergent CCT motif family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene Phosphoglucomutase/phosphomannomutase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of endo-1,4-beta-glucanase (cel1) in Arabidopsis thaliana is associated with plant growth, xylem development and cell wall thickening. Shani Z, et al. Plant Cell Rep, 2006 Oct. PMID 16758197
  2. Abnormal 'wrinkled' cell walls and retarded development of transgenic Arabidopsis thaliana plants expressing endo-1,4-beta-glucanase (cell) antisense. Tsabary G, et al. Plant Mol Biol, 2003 Jan. PMID 12602880
  3. Cloning and characterization of elongation specific endo-1,4-beta-glucanase (cel1) from Arabidopsis thaliana. Shani Z, et al. Plant Mol Biol, 1997 Aug. PMID 9290636
  4. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  5. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_105739.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell wall modification involved in multidimensional cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase 9B1
NP_177228.1
  • glycosyl hydrolase 9B1 (GH9B1); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cyclopentenone, cell wall modification involved in multidimensional cell growth; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B6 (TAIR:AT1G23210.1); Has 1758 Blast hits to 1741 proteins in 256 species: Archae - 2; Bacteria - 589; Metazoa - 188; Fungi - 19; Plants - 920; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26659129..26663337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105739.4 → NP_177228.1  glycosyl hydrolase 9B1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177228.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23696, O23697, Q9CAC1
    UniProtKB/TrEMBL
    A0A178W561, A0A5S9WT04
    Conserved Domains (1) summary
    PLN02308
    Location:1 → 492
    PLN02308; endoglucanase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAC1.1

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