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ARFA1D Ras-related small GTP-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843385, updated on 18-Sep-2024

Summary

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Official Symbol
ARFA1D
Official Full Name
Ras-related small GTP-binding family protein
Primary source
TAIR:AT1G70490
Locus tag
AT1G70490
See related
Araport:AT1G70490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATARFA1D; F24J13.6; F24J13_6
Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
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Genomic context

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See ARFA1D in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (26563718..26565865, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene root hair specific 10 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene OBP32pep, putative (DUF220) Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes encoding ADP-ribosylation factors in Arabidopsis thaliana L. Heyn.; genome analysis and antisense suppression. Gebbie LK, et al. J Exp Bot, 2005 Apr. PMID 15723828
  2. Arabidopsis phosphatidylinositol phosphate kinase 1 binds F-actin and recruits phosphatidylinositol 4-kinase beta1 to the actin cytoskeleton. Davis AJ, et al. J Biol Chem, 2007 May 11. PMID 17379598
  3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  4. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  5. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001334452.1
NM_001334453.1
NM_001334454.1
NM_001334455.1
NM_105717.3
NM_180644.3
NM_202391.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTP binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables GTP binding TAS
Traceable Author Statement
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables phospholipase activator activity TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Ras-related small GTP-binding family protein
NP_177206.1
  • ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
NP_850975.1
  • ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
NP_974120.1
  • ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26563718..26565865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180644.3 → NP_850975.1  Ras-related small GTP-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850975.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  2. NM_001334455.1 → NP_001323061.1  Ras-related small GTP-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  3. NM_001334454.1 → NP_001323060.1  Ras-related small GTP-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  4. NM_001334453.1 → NP_001323063.1  Ras-related small GTP-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  5. NM_001334452.1 → NP_001323062.1  Ras-related small GTP-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  6. NM_202391.2 → NP_974120.1  Ras-related small GTP-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974120.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  7. NM_105717.3 → NP_177206.1  Ras-related small GTP-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177206.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DH91.1
Q9LQC8.2

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