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Arginyl-tRNA synthetase, class Ic [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842971, updated on 18-Sep-2024

Summary

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Official Full Name
Arginyl-tRNA synthetase, class Ic
Primary source
TAIR:AT1G66530
Locus tag
AT1G66530
See related
Araport:AT1G66530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28G11.14; F28G11_14
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Genomic context

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Location:
chromosome: 1
Exon count:
17
Sequence:
Chromosome: 1; NC_003070.9 (24818911..24822410, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pre-mRNA cleavage complex II Neighboring gene AAR2 protein family Neighboring gene formyltransferase Neighboring gene miscRNA Neighboring gene Cytochrome P450 superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105324.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables arginine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in arginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
Arginyl-tRNA synthetase, class Ic
NP_176826.1
  • Arginyl-tRNA synthetase, class Ic; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT4G26300.1); Has 9450 Blast hits to 9344 proteins in 2861 species: Archae - 249; Bacteria - 5610; Metazoa - 270; Fungi - 189; Plants - 83; Viruses - 3; Other Eukaryotes - 3046 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24818911..24822410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105324.2 → NP_176826.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176826.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23246, Q9C713
    UniProtKB/TrEMBL
    A0A178WAI9, A0A5S9WPY7, A0A654ELJ2
    Conserved Domains (1) summary
    PLN02286
    Location:16 → 590
    PLN02286; arginine-tRNA ligase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C713.1

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