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AT1G62660 Glycosyl hydrolases family 32 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842563, updated on 7-Sep-2023

Summary

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Gene symbol
AT1G62660
Gene description
Glycosyl hydrolases family 32 protein
Primary source
Araport:AT1G62660
Locus tag
AT1G62660
See related
TAIR:AT1G62660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23N19.3
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Genomic context

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See AT1G62660 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (23199612..23203808)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-acyl carrier protein synthase III Neighboring gene miscRNA Neighboring gene rna processing factor 2 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Infection with virulent and avirulent P. syringae strains differentially affects photosynthesis and sink metabolism in Arabidopsis leaves. Bonfig KB, et al. Planta, 2006 Dec. PMID 16807755
  2. Differential expression of acid invertase genes during seed germination in Arabidopsis thaliana. Mitsuhashi W, et al. Biosci Biotechnol Biochem, 2004 Mar. PMID 15056893
  3. Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides. Yamada K, et al. J Biol Chem, 2010 Jan 8. PMID 19901034, Free PMC Article
  4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_001334045.1
NM_001334046.1
NM_104943.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables beta-fructofuranosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to gibberellin stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in plant-type vacuole IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Glycosyl hydrolases family 32 protein
NP_564798.1
  • Glycosyl hydrolases family 32 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3357 (InterPro:IPR021792), Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 32 protein (TAIR:AT1G12240.1); Has 4144 Blast hits to 4103 proteins in 1239 species: Archae - 18; Bacteria - 2530; Metazoa - 92; Fungi - 278; Plants - 1040; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23199612..23203808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334044.1 → NP_001323301.1  Glycosyl hydrolases family 32 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKC7, A0A1P8AWQ1
    Conserved Domains (1) summary
    smart00640
    Location:22 → 491
    Glyco_32; Glycosyl hydrolases family 32

  2. NM_104943.3 → NP_564798.1  Glycosyl hydrolases family 32 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564798.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q42567, Q43348, Q7DLY6, Q94BX0, Q9SI83, Q9SXD2
    UniProtKB/TrEMBL
    A0A654EQJ0, A0A7G2E1Z6
    Conserved Domains (4) summary
    smart00640
    Location:110 → 589
    Glyco_32; Glycosyl hydrolases family 32
    pfam00251
    Location:110 → 430
    Glyco_hydro_32N; Glycosyl hydrolases family 32 N-terminal domain
    pfam08244
    Location:504 → 589
    Glyco_hydro_32C; Glycosyl hydrolases family 32 C terminal
    pfam11837
    Location:16 → 102
    DUF3357; Domain of unknown function (DUF3357)

  3. NM_001334045.1 → NP_001323303.1  Glycosyl hydrolases family 32 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIU9, A0A1P8AWL7

  4. NM_001334046.1 → NP_001323302.1  Glycosyl hydrolases family 32 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIU9, A0A1P8AWL7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q43348.1

Gene LinkOut

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