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Glycine cleavage T-protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842391, updated on 18-Sep-2024

Summary

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Official Full Name
Glycine cleavage T-protein family
Primary source
TAIR:AT1G60990
Locus tag
AT1G60990
See related
Araport:AT1G60990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7P1.13; T7P1_13
Summary
Encodes a chloroplast-localized COG0354 protein that requires folate for its function in Fe/S cluster biogenesis.
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (22462026..22465495, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SCR-like 4 Neighboring gene SCR-like 5 Neighboring gene SCR-like 7 Neighboring gene S3 self-incompatibility locus-linked pollen protein Neighboring gene kinetochore protein Neighboring gene cleavage and polyadenylation specificity factor 73-I

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitochondrial and plastidial COG0354 proteins have folate-dependent functions in iron-sulphur cluster metabolism. Waller JC, et al. J Exp Bot, 2012 Jan. PMID 21984653, Free PMC Article
  2. A role for tetrahydrofolates in the metabolism of iron-sulfur clusters in all domains of life. Waller JC, et al. Proc Natl Acad Sci U S A, 2010 Jun 8. PMID 20489182, Free PMC Article
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_001084279.1
NM_001124050.2
NM_104780.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within iron-sulfur cluster assembly IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Glycine cleavage T-protein family
NP_001077748.1
  • Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 8503 Blast hits to 8501 proteins in 1606 species: Archae - 129; Bacteria - 4545; Metazoa - 161; Fungi - 80; Plants - 109; Viruses - 0; Other Eukaryotes - 3479 (source: NCBI BLink).
NP_001117522.1
  • Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_176295.3
  • Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 8503 Blast hits to 8501 proteins in 1606 species: Archae - 129; Bacteria - 4545; Metazoa - 161; Fungi - 80; Plants - 109; Viruses - 0; Other Eukaryotes - 3479 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22462026..22465495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001124050.2 → NP_001117522.1  Glycine cleavage T-protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117522.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q681Y3, Q6NKY4, Q9C954
    UniProtKB/TrEMBL
    A0A178W8G5, A0A5S9WRE0
    Conserved Domains (1) summary
    COG0354
    Location:111 → 429
    YgfZ; Folate-binding Fe-S cluster repair protein YgfZ, possible role in tRNA modification [Posttranslational modification, protein turnover, chaperones]

  2. NM_001084279.1 → NP_001077748.1  Glycine cleavage T-protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077748.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q681Y3, Q6NKY4, Q9C954
    UniProtKB/TrEMBL
    A0A178W8G5, A0A5S9WRE0
    Conserved Domains (1) summary
    COG0354
    Location:111 → 429
    YgfZ; Folate-binding Fe-S cluster repair protein YgfZ, possible role in tRNA modification [Posttranslational modification, protein turnover, chaperones]

  3. NM_104780.4 → NP_176295.3  Glycine cleavage T-protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176295.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q681Y3, Q6NKY4, Q9C954
    UniProtKB/TrEMBL
    A0A178W8G5, A0A5S9WRE0
    Conserved Domains (1) summary
    COG0354
    Location:111 → 429
    YgfZ; Folate-binding Fe-S cluster repair protein YgfZ, possible role in tRNA modification [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q681Y3.1

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