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LINC03129 long intergenic non-protein coding RNA 3129 [ Homo sapiens (human) ]

Gene ID: 84214, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03129provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3129provided by HGNC
Primary source
HGNC:HGNC:57044
See related
Ensembl:ENSG00000236529 AllianceGenome:HGNC:57044
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in testis (RPKM 4.4), skin (RPKM 0.4) and 2 other tissues See more
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Genomic context

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See LINC03129 in Genome Data Viewer
Location:
7q11.21
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65839704..65842402)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (67061841..67064533)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 912, pseudogene Neighboring gene uncharacterized LOC124901659 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:65304029-65304540 Neighboring gene RNA, U6 small nuclear 973, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:65337908-65338459 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18202 Neighboring gene vitamin K epoxide reductase complex subunit 1 like 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:65339011-65339562 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:65386680-65386862 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 75

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    65839704..65842402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002956508.2 RNA Sequence

    Related
    ENST00000447086.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    67061841..67064533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077597.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032254.1: Suppressed sequence

    Description
    NM_032254.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein
Heading Accession and Version

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