U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UKL3 uridine kinase-like 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842031, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
UKL3
Official Full Name
uridine kinase-like 3
Primary source
TAIR:AT1G55810
Locus tag
AT1G55810
See related
Araport:AT1G55810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20N2.21; F20N2_21; uridine kinase-like 3
Summary
One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See UKL3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (20860507..20864287)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ferredoxin-fold anticodon-binding domain protein Neighboring gene BolA-like family protein Neighboring gene lysine-specific demethylase, putative (DUF1296) Neighboring gene coiled-coil protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001333734.1
NM_001333735.1
NM_001333736.1
NM_001333737.1
NM_104458.4
NM_202307.3
NM_202308.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables uracil phosphoribosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables uridine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in CTP salvage IEA
Inferred from Electronic Annotation
more info
  
involved_in UMP salvage IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uridine kinase-like 3
NP_175977.1
  • uridine kinase-like 3 (UKL3); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 4 (TAIR:AT4G26510.2); Has 12937 Blast hits to 12923 proteins in 2615 species: Archae - 215; Bacteria - 9909; Metazoa - 552; Fungi - 508; Plants - 588; Viruses - 2; Other Eukaryotes - 1163 (source: NCBI BLink).
NP_974036.2
  • uridine kinase-like 3 (UKL3); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 4 (TAIR:AT4G26510.2); Has 12796 Blast hits to 12782 proteins in 2591 species: Archae - 213; Bacteria - 9841; Metazoa - 556; Fungi - 487; Plants - 538; Viruses - 2; Other Eukaryotes - 1159 (source: NCBI BLink).
NP_974037.1
  • uridine kinase-like 3 (UKL3); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 4 (TAIR:AT4G26510.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20860507..20864287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202307.3 → NP_974036.2  uridine kinase-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974036.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDH0
    Conserved Domains (3) summary
    COG0572
    Location:43 → 249
    Udk; Uridine kinase [Nucleotide transport and metabolism]
    cd02023
    Location:46 → 244
    UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
    pfam14681
    Location:262 → 458
    UPRTase; Uracil phosphoribosyltransferase

  2. NM_202308.2 → NP_974037.1  uridine kinase-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974037.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQ84, Q8VYB2, Q9LG32
    UniProtKB/TrEMBL
    A0A178WDH0
    Conserved Domains (3) summary
    COG0572
    Location:43 → 249
    Udk; Uridine kinase [Nucleotide transport and metabolism]
    cd02023
    Location:46 → 244
    UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
    pfam14681
    Location:262 → 463
    UPRTase; Uracil phosphoribosyltransferase

  3. NM_104458.4 → NP_175977.1  uridine kinase-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175977.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQ84, Q8VYB2, Q9LG32
    UniProtKB/TrEMBL
    A0A178WDH0
    Conserved Domains (3) summary
    COG0572
    Location:43 → 249
    Udk; Uridine kinase [Nucleotide transport and metabolism]
    cd02023
    Location:46 → 244
    UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
    pfam14681
    Location:262 → 463
    UPRTase; Uracil phosphoribosyltransferase

  4. NM_001333734.1 → NP_001323276.1  uridine kinase-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDH0, A0A1P8AWM1

  5. NM_001333735.1 → NP_001323275.1  uridine kinase-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDH0, A0A1P8AWM1

  6. NM_001333736.1 → NP_001323277.1  uridine kinase-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQ84, Q8VYB2, Q9LG32
    UniProtKB/TrEMBL
    A0A178WDH0

  7. NM_001333737.1 → NP_001323278.1  uridine kinase-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDD0, A0A1P8AWK0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYB2.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.