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Glycoprotein membrane precursor GPI-anchored [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841925, updated on 18-Sep-2024

Summary

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Official Full Name
Glycoprotein membrane precursor GPI-anchored
Primary source
TAIR:AT1G54860
Locus tag
AT1G54860
See related
Araport:AT1G54860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14C21.37; F14C21_37
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (20457257..20458631, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit C3 Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Late embryogenesis abundant (LEA) protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_104359.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
Glycoprotein membrane precursor GPI-anchored
NP_564669.1
  • Glycoprotein membrane precursor GPI-anchored; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT3G06035.1); Has 83 Blast hits to 82 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20457257..20458631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104359.4 → NP_564669.1  Glycoprotein membrane precursor GPI-anchored [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564669.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIR6, A0A654EK82, Q9ZVL0
Nucleotide Protein
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