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DEG6 DegP protease 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841538, updated on 18-Sep-2024

Summary

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Official Symbol
DEG6
Official Full Name
DegP protease 6
Primary source
TAIR:AT1G51150
Locus tag
AT1G51150
See related
Araport:AT1G51150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DegP protease 6; DegP6; degradation of periplasmic proteins 6; F11M15.1
Summary
Encodes a putative DegP protease.
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Genomic context

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See DEG6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (18948370..18949290, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nse4, component of Smc5/6 DNA repair complex Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene SNARE-like superfamily protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
DegP protease 6
NP_175527.2
  • DegP protease 6 (DegP6); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254); BEST Arabidopsis thaliana protein match is: Trypsin family protein (TAIR:AT5G54745.1); Has 545 Blast hits to 544 proteins in 132 species: Archae - 6; Bacteria - 188; Metazoa - 9; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18948370..18949290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103994.2 → NP_175527.2  DegP protease 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175527.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I802, Q9C691, Q9SYB7
    UniProtKB/TrEMBL
    A0A178WIW4
    Conserved Domains (1) summary
    pfam13365
    Location:85 → 201
    Trypsin_2; Trypsin-like peptidase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C691.2

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