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Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840908, updated on 18-Sep-2024

Summary

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Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT1G43090
Locus tag
AT1G43090
See related
Araport:AT1G43090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2H10.11; F2H10_11
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (16217197..16219150, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectin lyase-like superfamily protein
NP_175004.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G43100.1); Has 4057 Blast hits to 4037 proteins in 477 species: Archae - 6; Bacteria - 1181; Metazoa - 14; Fungi - 1258; Plants - 1474; Viruses - 2; Other Eukaryotes - 122 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16217197..16219150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103464.1 → NP_175004.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175004.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WM10, Q9C8C3
    Conserved Domains (2) summary
    pfam00295
    Location:58 → 389
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:31 → 389
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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