TT1 C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: TT1
Gene description: C2H2 and C2HC zinc fingers superfamily protein
Primary source: Araport:AT1G34790
Locus tag: AT1G34790
See related: TAIR:AT1G34790
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: transparent testa 1; WIP domain protein 1; WIP1
Summary: Encodes a zinc finger protein; involved in photomorphogenesis, flavonoid biosynthesis, flower and seed development.
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Genomic context

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See TT1 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 2

Sequence:: Chromosome: 1; NC_003070.9 (12763902..12765686)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

TT1 controls early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds.
Title: TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_103201.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables DNA-binding transcription factor activity	TAS Traceable Author Statement more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within flavonoid biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
located_in nucleus	TAS Traceable Author Statement more info	PubMed

General protein information

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Preferred Names: C2H2 and C2HC zinc fingers superfamily protein

NP_174737.2

transparent testa 1 (TT1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 15538 Blast hits to 10276 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 14379; Fungi - 110; Plants - 685; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

12763902..12765686

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_103201.3 → NP_174737.2 C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_174737.2

Status: REVIEWED

UniProtKB/Swiss-Prot

C0SUZ2, Q8VWG3, Q8VWL1

UniProtKB/TrEMBL

A0A5S9WLU2, A0A654ER07

Conserved Domains (1) summary

sd00017
Location:231 → 247

ZF_C2H2; C2H2 Zn finger [structural motif]