U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT1G29760 Putative adipose-regulatory protein (Seipin) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839854, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
AT1G29760
Gene description
Putative adipose-regulatory protein (Seipin)
Primary source
Araport:AT1G29760
Locus tag
AT1G29760
See related
TAIR:AT1G29760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CELLULOSE SYNTHASE LIKE D4; CLSD4; F1N18.18; F1N18_18
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AT1G29760 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (10422292..10424513)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene receptor-like kinase in flowers 1 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation. Greer MS, et al. Plant Cell, 2020 Sep. PMID 32690719, Free PMC Article
  2. SEIPIN Proteins Mediate Lipid Droplet Biogenesis to Promote Pollen Transmission and Reduce Seed Dormancy. Taurino M, et al. Plant Physiol, 2018 Feb. PMID 29203558, Free PMC Article
  3. Arabidopsis SEIPIN Proteins Modulate Triacylglycerol Accumulation and Influence Lipid Droplet Proliferation. Cai Y, et al. Plant Cell, 2015 Sep. PMID 26362606, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation.
    Title: SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation.
  2. Seipin2 (At1g29760) modulate triacylglycerol accumulation and influence lipid droplet proliferation.
    Title: Arabidopsis SEIPIN Proteins Modulate Triacylglycerol Accumulation and Influence Lipid Droplet Proliferation.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_102716.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within lipid droplet formation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within lipid droplet organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in lipid droplet organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen germination IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of double fertilization forming a zygote and endosperm IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within seed dormancy process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Putative adipose-regulatory protein (Seipin)
NP_174269.1
  • Putative adipose-regulatory protein (Seipin); CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: Putative adipose-regulatory protein (Seipin) (TAIR:AT2G34380.1); Has 493 Blast hits to 422 proteins in 86 species: Archae - 0; Bacteria - 253; Metazoa - 134; Fungi - 11; Plants - 78; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10422292..10424513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102716.4 → NP_174269.1  Putative adipose-regulatory protein (Seipin) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174269.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I340, Q9FXF3
    UniProtKB/TrEMBL
    A0A178WNK1, A0A5S9WBY2
    Conserved Domains (1) summary
    pfam06775
    Location:273 → 492
    Seipin; Putative adipose-regulatory protein (Seipin)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4I340.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools