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PUB17 plant U-box 17 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839808, updated on 18-Sep-2024

Summary

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Official Symbol
PUB17
Official Full Name
plant U-box 17
Primary source
TAIR:AT1G29340
Locus tag
AT1G29340
See related
Araport:AT1G29340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA PLANT U-BOX 17; ATPUB17; F15D2.34; F15D2_34; plant U-box 17
Summary
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.
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Genomic context

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See PUB17 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (10264043..10266917)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SecY protein transport family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ER lumen protein retaining receptor family protein Neighboring gene RNA polymerase II degradation factor-like protein (DUF1296) Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense. Yang CW, et al. Plant Cell, 2006 Apr. PMID 16531496, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102674.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within defense response to other organism IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plant-type hypersensitive response IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant U-box 17
NP_174228.1
  • plant U-box 17 (PUB17); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: defense response to fungus, incompatible interaction, defense response, incompatible interaction, apoptosis, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G01830.1); Has 4178 Blast hits to 3456 proteins in 244 species: Archae - 2; Bacteria - 18; Metazoa - 476; Fungi - 388; Plants - 2844; Viruses - 3; Other Eukaryotes - 447 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10264043..10266917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102674.4 → NP_174228.1  plant U-box 17 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174228.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZK7, Q9C7R6
    UniProtKB/TrEMBL
    A0A178WA68, A0A7G2DTR7
    Conserved Domains (4) summary
    PLN03200
    Location:403 → 563
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00044
    Location:533 → 559
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:408 → 433
    ARM; armadillo repeat [structural motif]
    cd16664
    Location:309 → 351
    RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7R6.1

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