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TAF4B TBP-associated factor 4B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839665, updated on 18-Sep-2024

Summary

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Official Symbol
TAF4B
Official Full Name
TBP-associated factor 4B
Primary source
TAIR:AT1G27720
Locus tag
AT1G27720
See related
Araport:AT1G27720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22C5.17; T22C5_17; TAF4; TBP-associated factor 4; TBP-associated factor 4B
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Genomic context

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See TAF4B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (9642486..9647620, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene lipase, putative (DUF620) Neighboring gene glycine-rich protein Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene Glycine-rich protein family Neighboring gene salt tolerance zinc finger Neighboring gene root hair defective 6-like 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332785.1
NM_102537.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TBP-associated factor 4B
NP_174093.3
  • TBP-associated factor 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4 (TAIR:AT5G43130.1); Has 801 Blast hits to 726 proteins in 155 species: Archae - 1; Bacteria - 21; Metazoa - 244; Fungi - 130; Plants - 81; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9642486..9647620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332781.1 → NP_001320205.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM38, A0A5S9W6C6

  2. NM_001332780.1 → NP_001320210.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM45, A0A5S9W6C6

  3. NM_001332779.1 → NP_001320204.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM40, A0A5S9W6C6

  4. NM_001332778.1 → NP_001320203.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6F1, A0A1P8AM41

  5. NM_001332782.1 → NP_001320208.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6F1, A0A1P8AM58

  6. NM_001332783.1 → NP_001320209.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM40, A0A5S9W6C6

  7. NM_001332784.1 → NP_001320206.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6F1, A0A1P8AM41

  8. NM_102537.3 → NP_174093.3  TBP-associated factor 4B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174093.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6SJR1, Q9SFY7
    UniProtKB/TrEMBL
    A0A5S9W6C6
    Conserved Domains (2) summary
    pfam05236
    Location:463 → 711
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam12174
    Location:89 → 144
    RST; RCD1-SRO-TAF4 (RST) plant domain

  9. NM_001332785.1 → NP_001320207.1  TBP-associated factor 4B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM49, A0A5S9W6C6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6SJR1.1

Gene LinkOut

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