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zein-binding protein (Protein of unknown function, DUF593) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839387, updated on 18-Sep-2024

Summary

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Official Full Name
zein-binding protein (Protein of unknown function, DUF593)
Primary source
TAIR:AT1G04890
Locus tag
AT1G04890
See related
Araport:AT1G04890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M7.12; F13M7_12
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (1380382..1382599, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase 10 Neighboring gene HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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NM_100367.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zein-binding protein (Protein of unknown function, DUF593)
NP_171981.2
  • CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT4G13630.2); Has 7701 Blast hits to 5611 proteins in 507 species: Archae - 60; Bacteria - 425; Metazoa - 4500; Fungi - 427; Plants - 586; Viruses - 7; Other Eukaryotes - 1696 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1380382..1382599 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100367.2 → NP_171981.2  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171981.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654E754, F4I759
    Conserved Domains (1) summary
    pfam04576
    Location:112 → 203
    Zein-binding; Zein-binding
Nucleotide Protein
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