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SPS3F sucrose phosphate synthase 3F [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839382, updated on 18-Sep-2024

Summary

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Official Symbol
SPS3F
Official Full Name
sucrose phosphate synthase 3F
Primary source
TAIR:AT1G04920
Locus tag
AT1G04920
See related
Araport:AT1G04920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSPS3F; F13M7.9; F13M7_9; sucrose phosphate synthase 3F
Summary
Encodes a protein with putative sucrose-phosphate synthase activity.
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Genomic context

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See SPS3F in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (1391434..1395953, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) Neighboring gene ncRNA Neighboring gene O-fucosyltransferase family protein Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene HIT-type Zinc finger family protein Neighboring gene translocon at the inner envelope membrane of chloroplasts 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Loss of the two major leaf isoforms of sucrose-phosphate synthase in Arabidopsis thaliana limits sucrose synthesis and nocturnal starch degradation but does not alter carbon partitioning during photosynthesis. Volkert K, et al. J Exp Bot, 2014 Oct. PMID 24994761, Free PMC Article
  2. The plant glycosyltransferase clone collection for functional genomics. Lao J, et al. Plant J, 2014 Aug. PMID 24905498
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100370.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables sucrose-phosphate synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
sucrose phosphate synthase 3F
NP_171984.2
  • sucrose phosphate synthase 3F (SPS3F); FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose synthase (InterPro:IPR000368), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 1F (TAIR:AT5G20280.1); Has 8635 Blast hits to 8489 proteins in 1558 species: Archae - 393; Bacteria - 5603; Metazoa - 16; Fungi - 85; Plants - 793; Viruses - 0; Other Eukaryotes - 1745 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1391434..1395953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100370.3 → NP_171984.2  sucrose phosphate synthase 3F [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171984.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RY24, Q9MAU0
    UniProtKB/TrEMBL
    A0A178WKI5, A0A384K9Z9, W8PW44
    Conserved Domains (1) summary
    TIGR02468
    Location:1 → 1058
    sucrsPsyn_pln; sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RY24.1

Gene LinkOut

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