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CEL5 cellulase 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838893, updated on 18-Sep-2024

Summary

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Official Symbol
CEL5
Official Full Name
cellulase 5
Primary source
TAIR:AT1G22880
Locus tag
AT1G22880
See related
Araport:AT1G22880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA CELLULASE 5; ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4; ATCEL5; ATGH9B4; cellulase 5; F19G10.16; F19G10_16
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Genomic context

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See CEL5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (8095449..8097790)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SNARE associated Golgi protein family Neighboring gene ncRNA Neighboring gene Vacuolar sorting protein 39 Neighboring gene kinase family with ARM repeat domain-containing protein Neighboring gene Galactose-binding protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036005.2
NM_001332565.1
NM_102134.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 

General protein information

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Preferred Names
cellulase 5
NP_001031082.1
  • cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_173701.1
  • cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 1763 Blast hits to 1753 proteins in 255 species: Archae - 2; Bacteria - 605; Metazoa - 186; Fungi - 17; Plants - 916; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8095449..8097790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036005.2 → NP_001031082.1  cellulase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031082.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9VNE4, A0A654ED99
    Conserved Domains (1) summary
    cl02959
    Location:1 → 400
    Glyco_hydro_9; Glycosyl hydrolase family 9

  2. NM_102134.3 → NP_173701.1  cellulase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173701.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23134, Q2V4L8
    UniProtKB/TrEMBL
    A0A5S9VNE4, A0A654ED99
    Conserved Domains (2) summary
    PLN02175
    Location:1 → 484
    PLN02175; endoglucanase
    PLN02420
    Location:11 → 478
    PLN02420; endoglucanase

  3. NM_001332565.1 → NP_001321403.1  cellulase 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQR5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2V4L8.2

Gene LinkOut

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