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EXT3 extensin 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838728, updated on 18-Sep-2024

Summary

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Official Symbol
EXT3
Official Full Name
extensin 3
Primary source
TAIR:AT1G21310
Locus tag
AT1G21310
See related
Araport:AT1G21310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEXT3; extensin 3; F16F4.4; F16F4_4; ROOT-SHOOT-HYPOCOTYL DEFECTIVE; RSH
Summary
Encodes extensin 3.
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Genomic context

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See EXT3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (7453245..7455009, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene nucleic acid/nucleotide binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The cell wall hydroxyproline-rich glycoprotein RSH is essential for normal embryo development in Arabidopsis. Hall Q, et al. Plant Cell, 2002 May. PMID 12034904, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101983.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in plant-type cell wall organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
extensin 3
NP_173553.1
  • extensin 3 (EXT3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: extensin 4 (TAIR:AT1G76930.1); Has 148545 Blast hits to 27416 proteins in 1232 species: Archae - 272; Bacteria - 19294; Metazoa - 56539; Fungi - 24663; Plants - 25187; Viruses - 4465; Other Eukaryotes - 18125 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7453245..7455009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101983.4 → NP_173553.1  extensin 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173553.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FS14, Q9FS16, Q9LMP2
    UniProtKB/TrEMBL
    A0A5S9VE03
    Conserved Domains (1) summary
    pfam04554
    Location:372 → 428
    Extensin_2; Extensin-like region
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FS16.3

Gene LinkOut

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