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TTTY12 testis expressed transcript, Y-linked 12 [ Homo sapiens (human) ]

Gene ID: 83867, updated on 17-Sep-2024

Summary

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Official Symbol
TTTY12provided by HGNC
Official Full Name
testis expressed transcript, Y-linked 12provided by HGNC
Primary source
HGNC:HGNC:18493
See related
Ensembl:ENSG00000237048 AllianceGenome:HGNC:18493
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TTY11; TTY12; NCRNA00135
Expression
Low expression observed in reference dataset See more
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Genomic context

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See TTTY12 in Genome Data Viewer
Location:
Yp11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (7804015..7810683)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (7459999..7466667)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (7672056..7678724)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene testis expressed transcript, Y-linked 16 Neighboring gene raftlin, lipid raft linker 1 pseudogene 1 Neighboring gene uncharacterized LOC107987339 Neighboring gene uncharacterized LOC105377229 Neighboring gene tripartite motif containing 60 pseudogene 1, Y-linked Neighboring gene zinc finger protein 92 pseudogene 1, Y-linked

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • testis transcript Y 12
  • testis-specific transcript, Y-linked 12 (non-protein coding)
  • transcript Y 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001551.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007275
    Related
    ENST00000413466.3

  2. NR_174112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007275
    Related
    ENST00000651670.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    7804015..7810683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    7459999..7466667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_031930.1: Suppressed sequence

    Description
    NM_031930.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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