U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CNGC8 cyclic nucleotide gated channel 8 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838566, updated on 15-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
CNGC8
Gene description
cyclic nucleotide gated channel 8
Primary source
Araport:AT1G19780
Locus tag
AT1G19780
See related
TAIR:AT1G19780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCNGC8; cyclic nucleotide gated channel 8; cyclic nucleotide gated channel 8; F14P1.12; F14P1_12
Summary
Encodes a member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CNGC8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (6833669..6836633, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATP-dependent protease La (LON) domain protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene purine permease 14 Neighboring gene SHI-related sequence 7 Neighboring gene trigalactosyldiacylglycerol 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility. Tunc-Ozdemir M, et al. PLoS One, 2013. PMID 23424627, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CNGC7 and 8 are at least partially redundant and provide an essential function at the initiation of pollen tube tip growth
    Title: Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_001332406.1
NM_101834.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen tube growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cyclic nucleotide gated channel 8
NP_173408.2
  • cyclic nucleotide gated channel 8 (CNGC8); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 7 (TAIR:AT1G15990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6833669..6836633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101834.4 → NP_173408.2  cyclic nucleotide gated channel 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173408.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FXH6
    UniProtKB/TrEMBL
    A0A5S9V964
    Conserved Domains (3) summary
    COG0664
    Location:502 → 637
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:508 → 639
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:150 → 437
    Ion_trans; Ion transport protein

  2. NM_001332406.1 → NP_001323012.1  cyclic nucleotide gated channel 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVR5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FXH6.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools