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RRA3 Nucleotide-diphospho-sugar transferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838519, updated on 18-Sep-2024

Summary

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Official Symbol
RRA3
Official Full Name
Nucleotide-diphospho-sugar transferase family protein
Primary source
TAIR:AT1G19360
Locus tag
AT1G19360
See related
Araport:AT1G19360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18O14.8; F18O14_8; reduced residual arabinose 3
Summary
Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.
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Genomic context

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See RRA3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (6690399..6692566, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene histone deacetylase complex subunit Neighboring gene Methyltransferase MT-A70 family protein Neighboring gene Brassinosteroid signaling positive regulator (BZR1) family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. O-glycosylated cell wall proteins are essential in root hair growth. Velasquez SM, et al. Science, 2011 Jun 17. PMID 21680836
  2. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
  3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_101793.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within root hair cell development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi medial cisterna HDA PubMed 
located_in Golgi medial cisterna IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
Nucleotide-diphospho-sugar transferase family protein
NP_564082.1
  • Nucleotide-diphospho-sugar transferase family protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 297 Blast hits to 291 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6690399..6692566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332391.1 → NP_001321670.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LN62
    UniProtKB/TrEMBL
    A0A178WBS7, A0A5S9V3G7
    Conserved Domains (1) summary
    pfam03407
    Location:182 → 405
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase

  2. NM_101793.4 → NP_564082.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564082.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LN62
    UniProtKB/TrEMBL
    A0A178WBS7, A0A5S9V3G7
    Conserved Domains (1) summary
    pfam03407
    Location:182 → 405
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LN62.1

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