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AT59 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838004, updated on 22-Aug-2024

Summary

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Official Symbol
AT59
Primary source
TAIR:AT1G14420
Locus tag
AT1G14420
See related
Araport:AT1G14420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14L17.19; F14L17_19
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (4931485..4933662, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ubiquitin carrier protein 1 Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene glyoxal oxidase-related protein Neighboring gene homeobox protein 31

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of the tobacco and Arabidopsis homologues of the pollen-expressed LAT59 gene of tomato. Kulikauskas R, et al. Plant Mol Biol, 1997 Jul. PMID 9278171
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101309.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables pectate lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within plant-type cell wall organization TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectate lyase family protein
NP_172894.1
  • AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT2G02720.1); Has 1736 Blast hits to 1725 proteins in 285 species: Archae - 2; Bacteria - 722; Metazoa - 0; Fungi - 281; Plants - 703; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4931485..4933662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101309.5 → NP_172894.1  Pectate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172894.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23665, Q9M9S2
    UniProtKB/TrEMBL
    A0A178W0I9, A0A5S9UFR3, A0A654EBD6, Q680M0
    Conserved Domains (2) summary
    smart00656
    Location:180 → 374
    Amb_all; Amb_all domain
    pfam04431
    Location:31 → 85
    Pec_lyase_N; Pectate lyase, N-terminus
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M9S2.1

Gene LinkOut

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