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SUMM2 LRR and NB-ARC domains-containing disease resistance protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837782, updated on 18-Sep-2024

Summary

Official Symbol
SUMM2
Official Full Name
LRR and NB-ARC domains-containing disease resistance protein
Primary source
TAIR:AT1G12280
Locus tag
AT1G12280
See related
Araport:AT1G12280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5O11.34; F5O11_34; suppressor of mkk1 mkk2 2
Summary
Encodes a NB-LRR protein SUMM2 involved in defense response to bacterium.
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Genomic context

See SUMM2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (4174875..4178021, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene stress-inducible protein Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_101100.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
LRR and NB-ARC domains-containing disease resistance protein
NP_172692.1
  • LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4174875..4178021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332027.1NP_001322571.1  LRR and NB-ARC domains-containing disease resistance protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCZ6, A0A1P8AUE3
  2. NM_101100.2NP_172692.1  LRR and NB-ARC domains-containing disease resistance protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172692.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P60838
    UniProtKB/TrEMBL
    A0A178WCZ6
    Conserved Domains (3) summary
    sd00031
    Location:540564
    LRR_1; leucine-rich repeat [structural motif]
    pfam00931
    Location:160441
    NB-ARC; NB-ARC domain
    pfam13855
    Location:539599
    LRR_8; Leucine rich repeat