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AT5G65820 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836711, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G65820
Gene description
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
Araport:AT5G65820
Locus tag
AT5G65820
See related
TAIR:AT5G65820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K22J17.3; K22J17_3
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Genomic context

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See AT5G65820 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (26339876..26341789, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ACC synthase 5 Neighboring gene uncharacterized protein Neighboring gene receptor like protein 57 Neighboring gene Thioredoxin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_125979.1

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_201383.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26339876..26341789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125979.1 → NP_201383.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201383.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49535, Q9FH87
    UniProtKB/TrEMBL
    A0A5S9YHD4
    Conserved Domains (4) summary
    TIGR00756
    Location:429 → 462
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:289 → 316
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:316 → 349
    PPR_1; PPR repeat
    pfam13041
    Location:285 → 334
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FH87.1

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