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NF-YC4 nuclear factor Y, subunit C4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836466, updated on 18-Sep-2024

Summary

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Official Symbol
NF-YC4
Official Full Name
nuclear factor Y, subunit C4
Primary source
TAIR:AT5G63470
Locus tag
AT5G63470
See related
Araport:AT5G63470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''nuclear factor Y; MLE2.10; MLE2_10; nuclear factor Y; subunit C4; subunit C4''
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Genomic context

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See NF-YC4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (25415600..25417199, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 1 Neighboring gene SAP domain-containing protein Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. NF-YC3, NF-YC4 and NF-YC9 are required for CONSTANS-mediated, photoperiod-dependent flowering in Arabidopsis thaliana. Kumimoto RW, et al. Plant J, 2010 Aug. PMID 20487380
  2. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Qi M, et al. Plant Biotechnol J, 2019 Jan. PMID 29878511, Free PMC Article
  3. QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions. Li L, et al. Proc Natl Acad Sci U S A, 2015 Nov 24. PMID 26554020, Free PMC Article
  4. Cell cycle-dependent switch of up-and down-regulation of human hsp70 gene expression by interaction between c-Myc and CBF/NF-Y. Taira T, et al. J Biol Chem, 1999 Aug 20. PMID 10446203
  5. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Liu X, et al. Nat Commun, 2016 Sep 14. PMID 27624486, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. expression with QQS reduces susceptibility to pathogens and pests
    Title: QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
  2. QQS protein binds to the transcriptional regulator AtNF-YC4 (Arabidopsis nuclear factor Y, subunit C4).
    Title: QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001037053.2
NM_125742.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within abscisic acid-activated signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within gibberellic acid mediated signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within negative regulation of starch metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of photomorphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of protein metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of long-day photoperiodism, flowering IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of seed germination IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleus IC
Inferred by Curator
more info
 PubMed 
located_in nucleus IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
nuclear factor Y, subunit C4
NP_001032130.1
  • ''nuclear factor Y, subunit C4'' (NF-YC4); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C1 (TAIR:AT3G48590.1); Has 1376 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 353; Plants - 441; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
NP_201152.1
  • ''nuclear factor Y, subunit C4'' (NF-YC4); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C1 (TAIR:AT3G48590.1); Has 1376 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 353; Plants - 441; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25415600..25417199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125742.6 → NP_201152.1  nuclear factor Y, subunit C4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201152.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FMV5
    UniProtKB/TrEMBL
    A0A178UJL4, A0A384KX14, B9DG64
    Conserved Domains (1) summary
    COG5208
    Location:60 → 217
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. NM_001037053.2 → NP_001032130.1  nuclear factor Y, subunit C4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032130.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FMV5
    UniProtKB/TrEMBL
    A0A178UJL4, A0A384KX14, B9DG64
    Conserved Domains (1) summary
    COG5208
    Location:60 → 217
    HAP5; CCAAT-binding factor, subunit C [Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FMV5.1

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